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Table 3 Quince's 454 data

From: Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows

  Artificial Priest Pot
  3% 5% 10% 3% 5% 10%
CROP 41 25 15 562 246 42
ESPRIT 248 77 38 1115 773 394
MAFFT+JC 686 686 686 3764 3764 3764
MAFFT+MAFFT 31933 31933 31933 15984 15984 15984
MAFFT+Mothur 1756 1756 1756 6672 6672 6672
Mothur+JC 49 36 33 640 537 537
Mothur+MAFFT 4276 4276 4276 2824 2824 2824
Mothur+Mothur 113 53 53 766 642 642
Mothur+PreC+ JC 61 40 36 662 482 482
Mothur+PreC+MAFFT 3864 3141 3141 1905 1625 1625
Mothur+PreC+Mothur 136 65 46 810 575 575
MUSCLE+JC 146 146 146 4059 4059 4059
MUSCLE+MAFFT 33491 33491 33491 15718 15718 15718
MUSCLE+Mothur 258 258 258 6433 6433 6433
Otupipe 66 39 24 793 570 302
RDP 250 94 43 1209 862 456
  1. OTUs observed with each of the workflows analysed at distances of 3, 5 and 10% for Quince's Artificial and Priest Pot datasets. For the Priest Pot data, 855 OTUs at 3% and 699 at 5% were previously estimated by Quince et al. [26].