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Table 4 Huse short read data

From: Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows

 

3%

5%

10%

CROP

NC

NC

NC

ESPRIT

6464

3308

1402

Unique:MAFFT+JC

23442

23442

23442

Unique: MAFFT+MAFFT

23445

23445

23445

Unique: MAFFT+Mothur

23445

23445

23445

Unique:Mothur+JC

23441

23441

23441

Unique: Mothur+MAFFT

23441

23441

23441

Unique: Mothur+Mothur

18210

18210

18210

Mothur+PreC+ JC

15594

15594

15594

Mothur+PreC+MAFFT

15601

15601

15601

Mothur+PreC+Mothur

14776

14776

14776

Unique:MUSCLE+JC

22816

22816

22816

Unique:MUSCLE+MAFFT

23444

23444

23444

Unique:MUSCLE+Mothur

21318

21318

21318

Otupipe

2149

1422

878

RDP

4228

2932

1777

  1. OTUs observed with each of the workflows analysed at distances of 3, 5 and 10% for a large number of short length reads dataset [24]. NC = non computable.
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BMC Bioinformatics

ISSN: 1471-2105

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