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Table 4 Huse short read data

From: Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows

  3% 5% 10%
CROP NC NC NC
ESPRIT 6464 3308 1402
Unique:MAFFT+JC 23442 23442 23442
Unique: MAFFT+MAFFT 23445 23445 23445
Unique: MAFFT+Mothur 23445 23445 23445
Unique:Mothur+JC 23441 23441 23441
Unique: Mothur+MAFFT 23441 23441 23441
Unique: Mothur+Mothur 18210 18210 18210
Mothur+PreC+ JC 15594 15594 15594
Mothur+PreC+MAFFT 15601 15601 15601
Mothur+PreC+Mothur 14776 14776 14776
Unique:MUSCLE+JC 22816 22816 22816
Unique:MUSCLE+MAFFT 23444 23444 23444
Unique:MUSCLE+Mothur 21318 21318 21318
Otupipe 2149 1422 878
RDP 4228 2932 1777
  1. OTUs observed with each of the workflows analysed at distances of 3, 5 and 10% for a large number of short length reads dataset [24]. NC = non computable.