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Table 1 Probe sets that query the ESR1 and ERBB2 genes

From: Jetset: selecting the optimal microarray probe set to represent a gene

  Gene annotation Jetset scores
Probe set Affy/Bioc Jetset S s S c S r S o
205225_at ESR1 ESR1 0.91 1.00 0.64 0.58
211233_x_at ESR1 ESR1 0.64 1.00 0.00 0.00
211234_x_at ESR1 ESR1 0.55 1.00 0.00 0.00
211235_s_at ESR1 ESR1 0.91 1.00 0.00 0.00
211627_x_at ESR1 -- -- -- -- --
215551_at ESR1 -- -- -- -- --
215552_s_at ESR1 ESR1 0.91 1.00 0.00 0.00
217163_at ESR1 ESR1 0.27 0.00 0.00 0.00
217190_x_at ESR1 ESR1 0.55 1.00 0.00 0.00
210930_s_at ERBB2 ERBB2 0.82 1.00 0.00 0.00
216836_s_at ERBB2 ERBB2 0.91 1.00 0.52 0.48
  1. Gene annotations are from the manufacturer (Affy) or from Bioconductor (Bioc) or derived in the present analysis (Jetset). Probe sets that did not meet the Jetset annotation specificity criteria are indicated by "--". Each probe set was scored for specificity (S s ), coverage (S c ), robustness against mRNA degradation (S r ), and a combined overall score (S o ). For each gene, the probe set with the highest overall score (in bold) is selected to represent that gene.