Table 1 Results when our novel strategy is applied to a real short read dataset
From: A new strategy for better genome assembly from very short reads
Measurements Assemblies | Total length | Average length | Contig number (> 1 kbp) | Longest length |
|---|---|---|---|---|
Velvet | 3,912,568 | 15,840 | 247 | 162,643 |
ABySS | 4,099,096 | 35,035 | 117 | 243,520 |
SOAPdenovo | 3,919,811 | 13,851 | 283 | 154,821 |
DBG | 3,927,655 | 18,974 | 207 | 241,821 |
Reliable A-contigs | 3,754,796 | 3,516 | 1068(> 0.5 kbp) | 39,380 |
Hybrid assembly | 4,304,581 | 45,793 | 94 | 241,821 |