From: Identifying elemental genomic track types and representing them uniformly
Notes | May further contain | |
---|---|---|
BioXSD description of feature type | ||
Name | 1 | |
Ontology concepts | 1 | |
Synonyms | ||
Textual note | ||
References | to database entries, databases, ontology concepts, other feature types | type of relationship with the referenced object2 |
More specific type of feature | name and/or concepts, synonyms, database entries | |
More generic class of feature types | name and/or concepts | |
BioXSD feature occurrence | ||
Position | segments, points3, positions outside of the actual sequence or feature occurrence4, dense points* (function) and dense partition* or step function* 5 | strand, certainty |
Scores (values) | double-precision signed floats (8 bytes), or any well-formatted strings* | unit, index, type of score2, note, position, provenance metadata |
Evidence | references to databases, tools, and citations; scores, verdict, reliability, provenance metadata | |
Name | ||
Note | ||
Alignments | alignment- and aligned sequence-specific scores, gaps, frameshifts, directions, note, provenance metadata | |
Sequence variation | variants, canonical variant, scores, position | |
Frame | ||
CDS phase | ||
References | to ontology concepts, database entries, other feature occurences (interconnections) | type of relationship with the referenced object2; scores of the relationship (weights of edges)* |