MotifMap: integrative genome-wide maps of regulatory motif sites for model species

BMC Bioinformatics

Table 1 Multiple alignment information

Species	Build	Alignment	# species in alignment	# of matrices
Yeast	sacCer2	multiz7way	7	507
Worm	ce6	multiz6way	6	6
Fly	dm3	multiz15way	12 (files only)^†	262
Mouse	mm9	multiz30way	30	830
Human	hg18	multiz28way	17 (placentals only)^†	837
Human	hg19	multiz46way	32 (placentals only)^†	837

Number of species in multiple alignments for each reference species, and the number of original matrices for each species. Comprehensive maps exist for yeast, worm, fly, mouse, and human (both for a 17-species and 32-species alignment). See the UCSC Genome Browser website for more information on the alignments used and the species they contain. ^†Trees used are truncated to remove the most distant species.

ISSN: 1471-2105