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Table 3 Performance comparison of the prototype and updated MotifMap pipelines

From: MotifMap: integrative genome-wide maps of regulatory motif sites for model species

  NFKB MYC P53 STAT1 CTCF NRSE
AUC
Prototype, 17 species 0.722 0.683 0.861 0.606 0.814 0.941
Update, 17 species 0.797 0.765 0.902 0.780 0.887 0.950
Update, 32 species 0.786 0.812 0.896 0.820 0.903 0.951
Number of sites
Prototype, 17 species 11,636 55,271 28,635 6,134 69,446 13,055
Update, 17 species 13,924 100,311 24,880 9,537 53,794 7,488
Update, 32 species 14,839 100,275 25,563 10,034 77,064 8,127
  1. Area under the ROC curve (AUC) and number of sites found for the prototype MotifMap pipeline versus the updated MotifMap pipeline (performed with the original 17-species alignment and a newer 32-species alignment); the best performing method for each motif is shown in bold.