Figure 5

Phylogeny of the reconstructed quasispecies (simulated data). Comparison between ShoRAH and our method on simulated data. A single simulation run is considered, consisting of 10,000 reads sampled over a quasispecies of 10 distinct variants (m/2 = 1.5%, n = 1,100, q = 50, w+1 = 7). The phylogenetic tree was constructed via Neighbor-Joining and distance based on simple number of differences, assessing branch significance through 100 bootstrap runs. Only nodes with a bootstrap support > 75% are indicated.