Bioinformatics analysis of disordered proteins in prokaryotes

Pavlović-Lažetić, Gordana M; Mitić, Nenad S; Kovačević, Jovana J; Obradović, Zoran; Malkov, Saša N; Beljanski, Miloš V

doi:10.1186/1471-2105-12-66

BMC Bioinformatics

Table 6 Habitat and GC content with respect to disorder content.

From: Bioinformatics analysis of disordered proteins in prokaryotes

				Functional group
Superkingdom	Habitat	GC content	Type	Isp	Cp	Me	Pc	N.C.
Archaea	Aquatic	Low	disord	6,62	6,49	2,04	2,45	5,95
			order	58,38	64,00	69,7	69,30	62,37
		Medium	disord	6,17	5,30	1,82	3,59	6,25
			order	60,79	66,52	72,25	67,97	62,02
		High	disord	19,64	18,96	10,33	13,10	22,96
			order	36,88	43,07	52,41	50,50	39,54
	Host-associated	Low	disord	6,23	5,97	3,01	2,99	10,33
			order	58,03	64,74	65,43	67,49	63,06
	Multiple	Medium	disord	9,10	6,47	3,40	6,88	10,09
			order	56,44	59,63	66,73	59,45	51,53
	Specialized	Low	disord	4,01	1,23	0,80	1,69	4,52
			order	62,60	73,68	75,00	73,46	70,34
		Medium	disord	5,15	3,75	1,30	2,14	4,19
			order	60,24	69,05	72,27	70,48	68,23
		High	disord	14,61	12,93	7,59	8,79	11,49
			order	47,58	53,75	60,04	58,04	55,13
Bacteria	Aquatic	Low	disord	7,88	5,91	2,35	3,99	9,99
			order	55,10	61,05	67,17	65,13	52,94
		Medium	disord	8,03	8,03	2,45	5,19	11,66
			order	58,21	61,96	70,26	64,96	50,29
		High	disord	9,68	8,91	3,25	6,30	16,10
			order	56,24	61,49	69,10	63,55	49,63
	Host-associated	Low	disord	6,38	10,73	2,36	5,94	16,68
			order	60,97	59,47	69,75	64,57	49,09
		Medium	disord	5,72	6,85	1,44	4,89	10,39
			order	61,44	62,85	72,66	65,98	52,57
		High	disord	9,68	11,24	3,48	7,45	20,95
			order	57,97	59,96	70,02	63,99	46,55
	Multiple	Low	disord	6,17	7,63	2,17	5,78	10,35
			order	59,25	59,80	67,39	64,70	54,18
		Medium	disord	6,46	7,86	1,91	4,87	10,46
			order	60,14	61,65	71,09	65,52	52,75
		High	disord	10,43	11,21	4,06	7,94	17,98
			order	56,69	58,66	69,04	62,36	47,88
	Specialized	Low	disord	3,05	3,00	0,62	1,67	10,97
			order	73,33	77,47	80,73	78,30	82,12
		Medium	disord	6,93	6,89	1,91	4,36	8,36
			order	58,82	63,10	70,31	65,96	54,30
		High	disord	18,55	17,39	7,59	10,25	20,44
			order	45,73	50,16	61,44	56,42	44,65
	Terrestrial	Medium	disord	5,79	8,24	2,12	4,74	10,15
			order	58,47	59,00	68,56	64,75	52,53
		High	disord	10,23	10,34	4,29	8,36	27,54
			order	58,61	62,11	71,05	63,38	43,45

The percentage of amino acids in disordered regions of L ≥41 AA is represented for each pair of (habitat, GC content level), and each functional group of COGs (Cp, Isp, Me, Pc, N.C.), in archaea/bacteria.

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ISSN: 1471-2105

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