Table 2 Summary of the HapMap samples analyzed by each algorithm.
From: Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
Chip type | Training samples | Test samples |
|---|---|---|
550 k | 112 (48:12:16:36) | - |
650 k | 112 (48:12:16:36) | 15 (0:0:0:15) |
1 m | 118 (49:13:17:39) | 7 (3:0:0:4) |
370 k Duo | 115 (49:13:16:37) | 45 (30:0:0:15) |
1 m Duo | 269 (89:45:45:90) | 33 (11:3:2:17) |
370 k Quad | 225 (73:38:37:77) | - |
610 k Quad | 225 (73:38:37:77) | 27 (10:5:6:6) |
660 k Quad | 267 (88:44:45:90) | 47 (30:0:0:17) |
omni1 Quad | 267 (88:44:45:90) | 67 (29:4:4:30) |
Total | 1,710 | 241 |