Table 1 Features of the R packages for ROC anaylsis
From: pROC: an open-source package for R and S+ to analyze and compare ROC curves
Package name | ROCR | Verification | ROC (Bioconductor) | pcvsuite | pROC |
|---|---|---|---|---|---|
Smoothing | No | Yes | No | Yes | Yes |
Partial AUC | Only SP1 | No | Only SP1 | Only SP | SP and SE |
Confidence intervals | Partial2 | Partial3 | No | Partial4 | Yes |
Plotting Confidence Intervals | Yes | Yes | No | Yes | Yes |
Statistical tests | No | AUC (one sample) | No | AUC, pAUC, SP | AUC, pAUC, SP, SE, ROC |
Available on CRAN | Yes | Yes | Yes |