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Table 1 Performance of GEM and BLAST

From: Flexible taxonomic assignment of ambiguous sequencing reads

dataset GEM-mapper BLAST
  no hits 1 hit ≥ 2 hits no hits 1 hit ≥ 2 hits
marine 194,015 4,655 23,621 66,493 8,741 147,057
human 527,727 334,521 91,335 31,881 812,392 109,310
twins V2 990,094 128,649 776 89 1,068,762 50,668
twins V6 523,161 199,782 94,999 36,603 648,975 132,364
chicken 10,442 7,140 4,395 1,548 13,084 7,345
Rat 273,114 27,226 31,509 2 287,971 43,876
  1. Comparison of GEM and BLAST hits for 6 datasets. Two or more hits correspond to ambiguous reads.