Flexible taxonomic assignment of ambiguous sequencing reads

BMC Bioinformatics

Table 2 Priest Pot Lake sample: Assignment

Priest Pot Lake environmental samples	reference microbial taxonomy
	5,165 type cultures			322,864 sequences
	no hits	1 hit	≥ 2 hits	no hits	1 hit	≥ 2 hits
FASTA	26,458	642	1,261	19,715	991	7,655
FASTQ	26,045	769	1,547	19,182	1,213	7,966

Priest Pot Lake samples: assignment without (FASTA) and with (FASTQ) quality scores for 5,165 type cultures and 322,864 sequences.

ISSN: 1471-2105