BMC Bioinformatics

Table 3 Priest Pot Lake sample: Taxonomic Distribution

From: Flexible taxonomic assignment of ambiguous sequencing reads

	leaves				F-measure			LCA
rank	0.0	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	1.0
domain	0	0	0	0	0	0	0	0	0	0	3
phylum	0	0	0	0	0	0	0	0	0	0	0
class	0	0	0	0	0	0	0	0	0	0	4
order	0	0	0	0	0	1	1	1	1	2	366
family	0	0	1	5	20	47	105	204	232	242	345
genus	0	190	424	455	467	445	561	754	733	727	543
species	1,261	1,071	836	801	774	768	594	302	295	290	0
	leaves				F -measure			LCA
rank	0.0	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	1.0
domain	0	0	0	0	0	0	0	0	0	0	27
phylum	0	0	0	0	0	0	0	0	0	0	0
Class	0	0	0	0	0	0	0	0	0	0	15
order	0	0	0	0	1	2	2	2	3	7	419
family	0	2	7	19	43	75	136	266	315	347	393
genus	0	290	529	561	587	568	689	938	902	892	693
species	1,547	1,255	1,011	967	916	902	720	341	327	301	0

Priest Pot Lake samples: taxonomic distribution without (top) and with (bottom) quality scores for 5,165 type cultures. The top row indicates values of the parameter q between 0 and 1.

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ISSN: 1471-2105

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