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Table 3 Priest Pot Lake sample: Taxonomic Distribution

From: Flexible taxonomic assignment of ambiguous sequencing reads

  leaves F-measure LCA
rank 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0
domain 0 0 0 0 0 0 0 0 0 0 3
phylum 0 0 0 0 0 0 0 0 0 0 0
class 0 0 0 0 0 0 0 0 0 0 4
order 0 0 0 0 0 1 1 1 1 2 366
family 0 0 1 5 20 47 105 204 232 242 345
genus 0 190 424 455 467 445 561 754 733 727 543
species 1,261 1,071 836 801 774 768 594 302 295 290 0
  leaves F -measure LCA
rank 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0
domain 0 0 0 0 0 0 0 0 0 0 27
phylum 0 0 0 0 0 0 0 0 0 0 0
Class 0 0 0 0 0 0 0 0 0 0 15
order 0 0 0 0 1 2 2 2 3 7 419
family 0 2 7 19 43 75 136 266 315 347 393
genus 0 290 529 561 587 568 689 938 902 892 693
species 1,547 1,255 1,011 967 916 902 720 341 327 301 0
  1. Priest Pot Lake samples: taxonomic distribution without (top) and with (bottom) quality scores for 5,165 type cultures. The top row indicates values of the parameter q between 0 and 1.