Table 2 Comparison of individual gene sets generated by GSEA and GSEA-AF
From: Appearance frequency modulated gene set enrichment testing
KEGG Pathway | GSEA | GSEA-AF | ||
|---|---|---|---|---|
| Â | NES | FDR(q-value) | NES | FDR(q-value) |
Cell-cycle | 2.038 | 0.0 | 1.943 | 0.0 |
Oxidative phosphorylation | 1.974 | 0.0 | 2.014 | 0.0 |
Biosynthesis of steroids | 1.77 | 0.03 | 1.812 | 0.02 |
Proteasome | 1.544 | 0.05 | 1.707 | 0.04 |
P53 signaling Pathway | 1.62 | 0.08 | 1.667 | 0.05 |
Pancreatic cancer | 1.385 | 0.21 | 1.612 | 0.08 |