Table 5 Sequential Predicates
Property/amino acid set | Predicate |
|---|---|
1- small {A,G,S,T} | small(X,Y) |
2- polar {D,E,H,K,N,Q,R,S,T,W,Y} | polar(X,Y) |
3- polar uncharged {N,Q} | polarUncharged(X,Y) |
4- aromatic {F,H,W,Y} | aromatic(X,Y) |
5- charged {D,E,H,I,K,L,R,V} | charged(X,Y) |
6- positively charged {H,K,R} | positivelyCharged(X,Y) |
7- negatively charged {D,E} | negativelyCharged(X,Y) |
8- tiny {A,G} | tiny(X,Y) |
9- bulky {F,H,R,W,Y} | bulky(X,Y) |
10- aliphatic {I,L,V} | aliphatic(X,Y) |
11- hydrophobic {I,L,M,V} | hydrophobic(X,Y) |
12- hydrophilic basic {K,R,H} | hydrophilicBasic(X,Y) |
13- hydrophilic acidic {E,D,N,Q} | hydrophilicAcidic(X,Y) |
14- neutral weakly hydrophobic {A,G,P,S,T} | neutralWeakHydrophobic(X,Y) |
15- hydrophobic aromatic {F,W,Y} | hydrophobicAromatic(X,Y) |
16- acidic {E,D} | acidic(X,Y) |
17- amino acid ratio | aminoacidRatio(X,W,Y) |
18- amino acid pair ratio | aminoacidPairRatio(X,W,Y) |