DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

BMC Bioinformatics

Table 7 Assembly quality and parameters after further tuning parameters for some datasets

Datasets	Type	Assembler	N50	N90	MAX	#Seq	Parameters
SRR006331	Contig	D-ABySS	6130	1513	16397	311	k = 24, c = 7
SRR001665	Contig	D-ABySS	20068	5147	73062	565	k = 31, c = 12
	Scaffold	D-Velvet	101245	30793	269944	146	k = 31, exp_cov = 36, cov_cutoff = 13

ISSN: 1471-2105