Skip to main content

Table 3 Indirect Functional Analysis

From: Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems

 

F 3+

 

F 2-

miRNA

Target Gene

Terms

miRNA

Target Gene

Terms

hsa-miR-9

BACE1

Endoplasmic reticulum, Golgi apparatus, integral to membrane, Gol, gi apparatus, Aspartyl protease

hsa-miR-422b

-

 

hsa-miR-363*

-

 

hsa-miR-23a

CXCL12

CELL ADHESION, CHEMOTAXIS, POSITIVE REGULATION OF MONOCYTE CHEMOTAXIS, EXTRACELLULAR SPACE

hsa-miR-20b*

ARID4B

TRANSCRIPTION REGULATION, NUCLEUS

hsa-miR-193a

-

 
 

MYLIP

PROTEIN UBIQUITINATION, UBIQUITIN-PROTEIN LIGASE ACTIVITY, NERVOUS SYSTEM DEVELOPMENT

hsa-miR-155

AGTR1

REGULATION OF NATRIURESIS, REGULATION OF CELL GROWTH, POSITIVE REGULATION OF INFLAMMATORY RESPONSE, REGULATION OF BLOOD VESSEL SIZE BY RENIN-ANGIOTENSIN

 

HIPK3

TRANSCRIPTION REGULATION, NUCLEUS

 

LDOC1

negative regulation of cell proliferation

 

CDKN1A

negative regulation of cell proliferation, response to toxin, response to UV, positive regulation of programmed cell death, cyclin-dependent protein kinase inhibitor activity

 

MATR3

nuclear matrix, RNA binding, protein binding

hsa-miR-19a*

PTEN

induction of apoptosis, regulation of cyclin-dependent protein kinase activity

 

BACH1

Transcription regulation, Nucleus, transcription factor activity

hsa-miR-17-5p*

E2F1

TRANSCRIPTION REGULATION, NUCLEUS, TRANSCRIPTION FACTOR ACTIVITY

 

TM6SF1

MEMBRANE

 

NCOA3

POSITIVE REGULATION OF TRANSCRIPTION, DNA-DEPENDENT, NUCLEUS, HISTONE ACETYLTRANSFERASE ACTIVITY

 

TP53INP1

INDUCTION OF APOPTOSIS

hsa-miR-17-3p*

-

-

   

hsa-miR-130b

-

-

   
  1. Target coding genes and annotation terms for miRNAs that were selected in Model 3. In capital letters categories that are related with the ones found by direct enrichment analysis on mRNAs. In italics categories not shared with the direct enrichment analysis. For F 3+ miRNAs marked with * belong to the identified polycistronic miRNA genes.