Table 2 GSEA approach results running limma GSEA with and without chromosome profile correction
Rank | GSEA - limma | q-value | GSEA - limma - corrected | q-value |
|---|---|---|---|---|
1 | B Cell Receptor Signaling Pathway;Cellular Process | 1.62E-05 | B Cell Receptor Signaling Pathway;Cellular Process | 2.68E-05 |
2 | hsa03018;RNA degradation | 1.44E-03 | SuperArray;G-Proteins/Signaling Molecules | 1.33E-03 |
3 | SuperArray;G-Proteins/Signaling Molecules | 1.53E-03 | hsa03018;RNA degradation | 2.31E-03 |
4 | TNF-alpha/NF-kB Signaling Pathway;Cellular Process | 3.79E-03 | TNF-alpha/NF-kB Signaling Pathway;Cellular Process | 2.93E-03 |
5 | hsa00510;N-Glycan biosynthesis | 4.20E-03 | Translation Factors;Cellular Process | 5.30E-03 |
6 | hsa04142;Lysosome | 8.78E-03 | hsa00510;N-Glycan biosynthesis | 5.40E-03 |
7 | SuperArray;Autophagy | 8.95E-03 | hsa04142;Lysosome | 6.40E-03 |
8 | BioCarta;Erk and PI-3 Kinase Are Necessary for Collagen Binding in Corneal Epithelia | 9.36E-03 | SuperArray;Autophagy | 8.21E-03 |
9 | Translation Factors;Cellular Process | 9.38E-03 | hsa05110;Vibrio cholerae infection | 9.42E-03 |
10 | BioCyc;glyoxylate cycle II | 1.06E-02 | BioCarta;Erk and PI-3 Kinase Are Necessary for Collagen Binding in Corneal Epithelia | 9.42E-03 |