An efficient algorithmic approach for mass spectrometry-based disulfide connectivity determination using multi-ion analysis

Murad, William; Singh, Rahul; Yen, Ten-Yang

doi:10.1186/1471-2105-12-S1-S12

Table 4 Comparison with predictive methods

From: An efficient algorithmic approach for mass spectrometry-based disulfide connectivity determination using multi-ion analysis

Protein	Known Pattern	Proposed Algorithm	DiANNA 1.1	DISULFIND	PreCys
ST8Sia IV	C¹⁴²C²⁹², C¹⁵⁶C³⁵⁶,	C ¹⁴² C ²⁹² , C ¹⁵⁶ C ³⁵⁶	C¹¹C¹⁵⁶, C¹⁴²C²⁹², C¹⁶⁹C³⁵⁶	None	C¹⁴²C³⁵⁶, C¹⁵⁶C²⁹²
Beta-LG	C⁸²C¹⁷⁶, C¹²²C¹³⁵	C ⁸² C ¹⁷⁶	C¹²C¹³⁷, C⁸²C¹⁷⁶, C¹²⁶C¹³⁵	None	None
FucT VII	C⁶⁸C⁷⁶, C²¹¹C²¹⁴, C³¹⁸C³²¹	C ⁶⁸ C ⁷⁶ , C ²¹¹ C ²¹⁴ , C ³¹⁸ C ³²¹	C⁶⁸C³²¹, C⁷⁶C²¹¹, C²¹⁴C³¹⁸	C⁷⁶C³¹⁸	C⁶⁸C⁷⁶, C²¹¹C²¹⁴, C³¹⁸C³²¹
B1,4-GalT	C¹³⁴C¹⁷⁶, C²⁴⁷C²⁶⁶	C ¹³⁴ C ¹⁷⁶ , C ²⁴⁷ C ²⁶⁶	C²³C¹⁷⁶, C³⁰C¹⁴⁴, C²⁶⁶C³⁴¹	None	C¹³⁴C²⁴⁷, C¹⁷⁶C²⁶⁶
C2GnT-I	C⁵⁹C⁴¹³, C¹⁰⁰C¹⁷², C¹⁵¹C¹⁹⁹, C³⁷²C³⁸¹	C ⁵⁹ C ⁴¹³ , C ¹⁵¹ C ¹⁹⁹ , C ³⁷² C ³⁸¹	C¹³C¹⁷², C⁵⁹C²¹⁷, C¹⁵¹C²³⁴, C¹⁹⁹C³⁷², C³⁸¹C⁴¹³	Not supported	C⁵⁹C³⁸¹, C¹⁰⁰C³⁷², C¹⁵¹C¹⁷², C¹⁹⁹C⁴¹³
Lysozyme	C²⁴C¹⁴⁵, C⁴⁸C¹³³	C ²⁴ C ¹⁴⁵ , C ⁴⁸ C ¹³³ ,	C²⁴C¹⁴⁵, C⁴⁸C¹³³, C⁸²C⁹⁸, C⁹⁴C¹¹²	C²⁴C¹⁴⁵, C⁴⁸C¹³³, C⁸²C⁹⁸, C⁹⁴C¹¹²	C⁸²C¹⁴⁵
FT III	C⁸¹C³³⁸, C⁹¹C³⁴¹	C ⁸¹ C ³³⁸	C¹⁶C⁹¹, C⁸¹C¹⁴³, C¹²⁹C³³⁸	None	C⁸¹C⁹¹
Aldolase	None	None	C⁷³C³³⁹, C¹³⁵C²⁹⁰, C¹¹⁵C²⁴⁰, C¹⁷⁸C²⁰²	None	None
Aspa	None	None	C⁴C²⁷⁵, C⁶⁰C²¹⁷, C⁶⁶C¹⁵¹, C¹²³C¹⁴⁵	None	None

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ISSN: 1471-2105

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