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Table 1 Evaluation results with comparisons

From: SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model

  SOMEA SOMBRERO MEME ALIGNACE WEEDER
R P F R P F R P F R P F R P F  
CRP 0.91 0.89 0.9 0.83 0.43 0.56 0.59 0.88 0.69 0.83 0.98 0.9 0.75 0.83 0.79
GCN4 0.69 0.45 0.54 0.8 0.41 0.53 0.52 0.52 0.52 0.61 0.62 0.6 0.64 0.87 0.73
ERE 0.74 0.58 0.65 0.8 0.59 0.67 0.72 0.82 0.77 0.75 0.77 0.76 0.76 0.54 0.63
MEF2 0.81 0.99 0.89 0.35 0.22 0.27 0.92 0.8 0.85 0.86 0.87 0.86 0.88 0.88 0.88
SRF 0.84 0.74 0.79 0.67 0.83 0.74 0.87 0.72 0.79 0.83 0.71 0.77 0.83 0.71 0.76
CREB 0.89 0.67 0.77 0.83 0.43 0.56 0.59 0.88 0.69 0.52 0.66 0.57 0.79 0.71 0.75
E2F 0.82 0.64 0.71 0.76 0.67 0.71 0.68 0.64 0.65 0.75 0.68 0.71 0.89 0.67 0.76
MYOD 0.66 0.39 0.49 0.5 0.32 0.39 0.23 0.38 0.27 0.34 0.31 0.32 0.43 0.5 0.46
Average 0.80 0.67 0.72 0.69 0.49 0.55 0.64 0.71 0.65 0.69 0.70 0.69 0.75 0.71 0.72