Figure 1
From: GARNET – gene set analysis with exploration of annotation relations
GARNET system overview. a) The annotation categories and types integrated in the GARNET system. b) The schematic overview of the workflow. The three main modules in the GARNET system are Gene Set Manager Tool, Retrieval Tool and Analysis Tool. The user-supplied genes are converted to standard gene IDs (Entrez Gene ID) by Manager Tool. A Gene set can be expanded via biological networks in Retrieval Tool. Analysis Tool performs gene set analysis (GSA) against the GARNET annotations selected by the user.