From: GARNET – gene set analysis with exploration of annotation relations
Category | Annotation DB | Number of Annotations | Number of Unique Genes | Version | Update Date |
---|---|---|---|---|---|
Molecular Network | KEGG | 199 | 5193 | Release 54.0+/ | 2010.05.10 |
BioCarta | 314 | 1383 | 2010.04.06 | ||
Protein-Protein Interactions (PPI) | 5829 | 7631 | NCBI integrated DB | 2010.05.17 | |
miRBase | 711 | 34525 | 5.0 | 2009.09.29 | |
TarBase | 106 | 394 | V5 | 2008.06 | |
TargetScan | 162 | 7930 | 4.2 | ||
PicTar-4way | 178 | 9152 | hg17, Build 35 | ||
PicTar-5way | 130 | 3455 | hg17, Build 35 | ||
Genome Annotation | Gene Ontology (GO) | 30479 | 18242 | 2010.05.20 | |
Pfam domains | 3922 | 16409 | 24.0 | 2009.10.07 | |
Chromosomal Bands | 3078 | 32920 | 2010.05.23 | ||
Gene Expression | Tissue EST | 51 | 13367 | 2010.04.06 | |
Tissue SAGE | 32 | 8528 | 2010.04.06 | ||
Tissue Microarray | 32 | 10769 | |||
Cancer Microarray | 25 | 13619 | |||
Disease & Drug | OMIM | 1063 | 2683 | 2008.08.27 | |
GAD | 1212 | 2872 | 2008.12.26 | ||
DrugBank | 591 | 259 | |||
Total | 57973 | 32920 |