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Figure 5 | BMC Bioinformatics

Figure 5

From: Ligand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sites

Figure 5

(a) Heat-map of the distance matrix between all binding sites in scPDB ordered accotding to the clustering tree. Warmer colors (red) correspond to closer APF similarity. Larger diagonal blocs are annotated. Because the complete tree is too large, to illustrate its structure the branches comprising SAM-dependent methyl transferases (b) and aminoacyl-tRNA synthases (c) are shown.

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BMC Bioinformatics

ISSN: 1471-2105

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