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Table 1 Performance evaluation on BRAliBase 2.1

From: PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach

Method k2 k3 k5 k7 k10 k15 TIME
  SPS/SCI SPS/SCI SPS/SCI SPS/SCI SPS/SCI SPS/SCI  
PicXAA-R 84.27 / 85.86 86.59 / 83.35 88.78 / 83.20 90.04 / 81.72 90.97 / 79.95 92.17 / 79.73 6502
ProbConsRNA 83.58 / 82.46 85.46 / 76.54 87.90 / 75.85 88.99 / 74.91 89.90 / 73.25 90.76 / 71.92 1444
MXSCARNA 85.02 / 90.67 86.57 / 85.56 88.43 / 83.44 89.40 / 80.89 90.17 / 78.34 91.26 / 77.18 6024
CentroidAlign 85.55 / 88.64 87.06 / 83.77 88.93 / 82.40 89.99 / 81.23 90.96 / 80.22 91.65 / 79.34 6443
MAFFT-xinsi 85.66 / 90.77 87.76 / 87.11 90.27 / 86.70 91.36 / 85.70 92.26 / 84.73 93.22 / 85.38 12386