Table 1 Performance evaluation on BRAliBase 2.1
From: PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach
Method | k2 | k3 | k5 | k7 | k10 | k15 | TIME |
|---|---|---|---|---|---|---|---|
| Â | SPS/SCI | SPS/SCI | SPS/SCI | SPS/SCI | SPS/SCI | SPS/SCI | Â |
PicXAA-R | 84.27 / 85.86 | 86.59 / 83.35 | 88.78 / 83.20 | 90.04 / 81.72 | 90.97 / 79.95 | 92.17 / 79.73 | 6502 |
ProbConsRNA | 83.58 / 82.46 | 85.46 / 76.54 | 87.90 / 75.85 | 88.99 / 74.91 | 89.90 / 73.25 | 90.76 / 71.92 | 1444 |
MXSCARNA | 85.02 / 90.67 | 86.57 / 85.56 | 88.43 / 83.44 | 89.40 / 80.89 | 90.17 / 78.34 | 91.26 / 77.18 | 6024 |
CentroidAlign | 85.55 / 88.64 | 87.06 / 83.77 | 88.93 / 82.40 | 89.99 / 81.23 | 90.96 / 80.22 | 91.65 / 79.34 | 6443 |
MAFFT-xinsi | 85.66 / 90.77 | 87.76 / 87.11 | 90.27 / 86.70 | 91.36 / 85.70 | 92.26 / 84.73 | 93.22 / 85.38 | 12386 |