Table 3 Performance evaluation on LocExtR
From: PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach
Method | k20 | k40 | k60 | k80 | TIME |
|---|---|---|---|---|---|
| Â | SPS/SCI | SPS/SCI | SPS/SCI | SPS/SCI | Â |
PicXAA-R | 71.46 / 17.43 | 77.52 / 16.08 | 80.19 / 11.00 | 82.51 / 10.73 | 999 |
ProbConsRNA | 64.97 / 10.13 | 69.08 / 8.12 | 72.11 / 5.80 | 74.46 / 6.87 | 676 |
MXSCARNA | 65.52 / 9.67 | 68.30 / 8.44 | 69.45 / 9.15 | 71.16 / 8.93 | 662 |
CentroidAlign | 71.68 / 18.63 | 74.48 / 15.56 | 77.55 / 11.90 | 79.32 / 10.07 | 1359 |
MAFFT-xinsi | 77.02 / 26.30 | 80.48 / 20.84 | 81.96 / 16.70 | 83.52 / 14.00 | 3791 |