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Table 3 Gene Ontology distribution incorrectly annotated across evidence codes and the related factors

From: GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products

Evidence code

No. of inaccurate annotation (correlation coefficient value)

Total No. of GO annotation

 

Redundant annotation

Biological domain inconsistent annotation

Taxonomy inconsistent annotation

Total inaccurate annotation

 

NR

0 (*)

0 (*)

0 (*)

0 (*)

6

ISM

30 (-0.07)

2 (0.26)

0 (*)

32 (-0.06)

279

ISA

287 (-0.05)

1,385 (0.40)

0 (*)

1,672 (-0.04)

11,756

IGC

322 (-0.05)

11 (0.43)

0 (*)

333 (-0.04)

888

IC

1,193 (-0.03)

1,265 (0.40)

0 (*)

2,458 (-0.02)

12,490

IEP

2,344 (-0.03)

2,467 (0.46)

0 (*)

4,811 (-0.02)

27,889

EXP

3,273 (0.08)

1,221 (0.16)

0 (*)

4,494 (0.08)

20,781

IGI

3,628 (-0.02)

4,171 (0.41)

0 (*)

7,799 (-0.02)

34,985

RCA

6,469 (-0.07)

7,710 (0.18)

0 (*)

14,179 (-0.06)

85,014

NAS

7,921 (0.01)

4,285 (0.39)

0 (*)

12,206 (0.02)

58,687

IPI

10,555 (0.11)

1,163 (0.31)

0 (*)

11,718 (0.11)

72,597

ISO

14,119 (-0.05)

15,956 (0.39)

16 (-0.06)

30,091 (-0.04)

115,268

TAS

15,944 (0.01)

8,331 (0.39)

5 (-0.01)

24,280 (0.01)

113,414

ND

18,987 (-0.07)

1 (0.51)

0 (*)

18,988 (-0.05)

366,152

ISS

24,314 (0.01)

12,828 (0.53)

49 (0.01)

37,191 (0.03)

377,770

IMP

25,994 (-0.03)

29,932 (0.38)

160 (-0.06)

56,086 (-0.03)

242,825

IDA

44,327 (0.01)

29,863 (0.38)

17 (-0.02)

74,207 (0.01)

311,481

IEA

11,433,355 (0.99)

219,560 (0.75)

56,180 (0.99)

11,709,095 (0.99)

42,984,075

NA (Not Avaliable)

803 (-0.02)

3,654 (0.61)

12 (-0.04)

4,469 (-0.01)

18,102

No of gene product

(0.71)

(0.97)

(0.69)

(0.72)

 

No. of species

(0.99)

(0.78)

(0.99)

(0.99)

 

No. of GO term

(0.35)

(0.57)

(0.34)

(0.36)

 

Average No. of annotations

(0.99)

(0.76)

(0.99)

(0.99)

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