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Table 2 Link prediction performance of 85/15 cross validation (7.5% of observed edges held out).

From: Resolving the structure of interactomes with hierarchical agglomerative clustering

Physical interactions
Data HAC-ML GDK CNM VBM HAC-ES HAC-E HAC-Q
Yeast-PPI 0.79±0.5 0.69±0.3 0.69±0.7 0.76±0.4 0.71±0.5 0.69±0.7 0.69±0.8
Drosophila 0.73±0.8 0.66±0.2 0.67±0.4 0.70±0.4 0.67±0.3 0.67±0.3 0.67±0.4
Human 0.73±0.9 0.75±0.7 0.71±0.5 0.70±0.6 0.67±0.4 0.68±0.5 0.69±1.0
Celegans 0.68±1.5 0.67±1.3 0.68±1.3 0.66±0.6 0.66±0.8 0.66±0.7 0.67±0.8
Arabidopsis 0.80±8.3 0.92±2.2 0.92±3.2 0.90±3.6 0.78±11.0 0.87±10.8 0.88±11.4
Genetic interactions
Data HAC-ML GDK CNM VBM HAC-ES HAC-E HAC-Q
Yeast-GEN 0.78±2.3 0.67±0.0 0.69±0.7 0.74±6.0 0.73±0.8 0.67±0.1 0.69±0.7
SGA 0.76±1.5 0.67±0.0 0.67±0.2 0.76±0.3 0.70±0.2 0.67±0.0 0.69±0.2
SLAM 0.92±1.0 0.91±0.5 0.68±0.8 0.67±0.3 0.84±2.9 0.76±1.0 0.67±0.3
  1. First numbers indicate an average F1 score of multiple experiments and second numbers following ± sign are standard deviations of last-digit (multiplied by 100).