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Table 2 Link prediction performance of 85/15 cross validation (7.5% of observed edges held out).

From: Resolving the structure of interactomes with hierarchical agglomerative clustering

Physical interactions

Data

HAC-ML

GDK

CNM

VBM

HAC-ES

HAC-E

HAC-Q

Yeast-PPI

0.79±0.5

0.69±0.3

0.69±0.7

0.76±0.4

0.71±0.5

0.69±0.7

0.69±0.8

Drosophila

0.73±0.8

0.66±0.2

0.67±0.4

0.70±0.4

0.67±0.3

0.67±0.3

0.67±0.4

Human

0.73±0.9

0.75±0.7

0.71±0.5

0.70±0.6

0.67±0.4

0.68±0.5

0.69±1.0

Celegans

0.68±1.5

0.67±1.3

0.68±1.3

0.66±0.6

0.66±0.8

0.66±0.7

0.67±0.8

Arabidopsis

0.80±8.3

0.92±2.2

0.92±3.2

0.90±3.6

0.78±11.0

0.87±10.8

0.88±11.4

Genetic interactions

Data

HAC-ML

GDK

CNM

VBM

HAC-ES

HAC-E

HAC-Q

Yeast-GEN

0.78±2.3

0.67±0.0

0.69±0.7

0.74±6.0

0.73±0.8

0.67±0.1

0.69±0.7

SGA

0.76±1.5

0.67±0.0

0.67±0.2

0.76±0.3

0.70±0.2

0.67±0.0

0.69±0.2

SLAM

0.92±1.0

0.91±0.5

0.68±0.8

0.67±0.3

0.84±2.9

0.76±1.0

0.67±0.3

  1. First numbers indicate an average F1 score of multiple experiments and second numbers following ± sign are standard deviations of last-digit (multiplied by 100).