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Table 11 Some typical properties in the five identified clusters for analyzing DNA-binding domains

From: Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties

Cid AAindex ID PCP

Cid AAindex ID PCP

7

BHAR880101 Flexibility

10

FASG760105

pK-C

7

BURA740101 Secondary structure

10

JOND750102

pk- (-COOH)

7

CHOC760103 Solvent accessibility

10

RADA880108

Polarity

7

HOPT810101 Hydrophobicity

16

PRAM900101

Hydrophobicity

7

FAUJ880111 Charge

16

FUKS010104

Solvent accessibility

9

KARP850101 Flexibility

16

KUMS000103

Secondary structure

9

PALJ810115 Secondary structure

18

PONP800107

Solvent accessibility

9

ROSM880101 Hydrophobicity

18

GRAR740102

Polarity

9

KUHL950101 Solvent accessibility

18

FASG760104

pK-N

10

ZIMJ680101 Hydrophobicity

18

FAUJ880113

pK-a(RCOOH)

10

EISD860101 Solvent accessibility

18

FAUJ880103

Normalized van der

10

GEIM800101 Secondary structure

  

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  1. Cid: Cluster ID. PCP: physicochemical and biochemical property