From: Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures
Method
Computation time (s)
Normal
Plus flanking regions
Plus unrelated sequences
proposed
95
222
199
FOLDALIGN
71748
226066
167228
LocARNA
9704
64679
30287
Stem kernel
61
179
138
LA kernel
71
163
160
CLUSTALW
4
43
6