Table 1 Summary statistics for the three datasets used in evaluation
From: Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads
Dataset | Test SNPs | Raw Reads | Raw Sequence | Mapped Reads | Avg. Mapped SNP coverage |
|---|---|---|---|---|---|
Watson 454 | 443K | 74.2M | 19.7Gb | 49.8M (67%) | 5.85× |
NA18507 Illumina | 2.85M | 525M | 18.9Gb | 397M (78%) | 6.10× |
NA18507 SOLiD | 2.85M | 2.45G | 75Gb | 900M (37%) | 9.85× |