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Table 1 Datasets used for evaluation of LSI based methods.

From: Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets

Dataset No.

GEO Series

Stimulant

TF Knockout

# DEGs (n)

1

GSE3400

Interferon

Rel

95

2

GSE20030

IL-4

Stat6

50

3

GSE2082

Tunicamycin

Ddit3 (CHOP)

55

4

GSE21861

Growth Hormone (GH)

Stat5a/b

61

5

GSE15871

TGF-β1

Nfic

51