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Table 3 Top 25 ranked TFs for five microarray derived gene sets using tf-normal LSI model.

From: Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets

tf-normal LSI model

Rank

Interferon

IL-4

Tunicamycin

GH

TGF- β1

1

Irf7

Stat4

Yy1

Nfkb1

Smad7

2

Irf1

Stat6

Atf4

Nfkb2

Smad9

3

Irf8

Irf1

Zbtb7a

Rela

Postn

4

Irf5

Irf5

Atf7

Rel

Smad6

5

Irf2

Stat1

Nfyb

Ifi47

Smad1

6

Irf3

Ifi47

Zfp143

Stat4

Smad5

7

Irf9

Nfkb1

Nfya

Irf7

Hif1a

8

Stat1

Itgal

Zbtb6

Stat6

Nfkb1

9

Ifi47

Stat2

Atf2

Irf1

Stat3

10

Stat2

Irf3

Elk1

Stat1

Egr1

11

Stat4

Irf7

Nfyc

Stat2

Nfatc1

12

Nfkb1

Pparg

Cebpe

Stat3

Smad4

13

Irf4

Irf9

Atf5

Stat5a

Smad3

14

Zfp143

Foxp3

Junb

Cebpb

Smad2

15

Nfkb2

Irf8

Atf6

Irf3

Runx2

16

Cebpe

Nfe2l2

Bach1

Stat5b

Stat5a

17

Zbtb6

Stat3

E4f1

Irf9

Gata4

18

Elf4

Foxo1

Elk4

Foxp3

Tgif1

19

Ddit3

Irf2

Atf3

Foxo3

Foxm1

20

Stat3

Ppard

Zfp148

Irf5

Gata6

21

Rela

Ppara

Ddit3

Itgal

Gata5

22

Rel

Foxo3

Jund

Irf8

Nkx2-5

23

Atf4

Srebf1

Hsf2

Cebpe

Lef1

24

Xbp1

Srebf2

Elk3

Pparg

Cebpd

25

Hsf1

Ddit3

Hsf1

E2f1

Nkx3-2

  1. TFs displayed in bold font were used as ground truth because they were targeted in the published study as critical regulators for each gene set.