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Table 4 Top 25 ranked TFs for five microarray derived gene sets using log-entropy LSI model.

From: Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets

log-entropy LSI model

Rank

Interferon

IL-4

Tunicamycin

GH

TGF-β1

1

Irf8

Stat3

Nfyc

Irf1

Gata4

2

Irf1

Nfkb1

Nfyb

Stat1

Gata6

3

Rel

Smad3

Nfya

Stat6

Wt1

4

Irf5

Stat1

Zbtb7a

Stat4

Cdx2

5

Irf4

Rela

Nfe2l1

Nfe2l2

Tcfap2a

6

Irf2

Egr1

Zfp143

Egr1

Fosl1

7

Nfkb2

Jun

Hsf2

Creb1

Postn

8

Stat1

Stat5a

Rfx5

Smad3

Smad1

9

Stat2

Pparg

Maz

Hif1a

Pgr

10

Prdm1

Irf1

Atf7

Hp

Egr1

11

Irf7

Foxo3

Zfp148

Sfpi1

Sox9

12

Nfatc2

Vdr

Tcfap4

Sp1

Srf

13

Sfpi1

Smad7

Cebpg

Stat3

Smad7

14

Stat4

Kitl

Mafg

Nr3c1

Arnt

15

Irf3

Sp1

Rfx1

Irf3

Smad3

16

Irf9

Stat6

Sp2

Smad7

Gli1

17

Gfi1

Hif1a

Gtf2i

Cebpb

Pax8

18

Rela

Stat5b

Bach1

Irf5

Rarg

19

Bcl6

Fos

Gabpb1

Fos

Ar

20

Xbp1

Gata3

Tcfcp2

Irf8

Smad2

21

Nfkb1

Stat4

E4f1

Kitl

Tcf7l2

22

Nfatc3

Myc

Bach2

Itgal

Nkx2-1

23

Atf6

Nr3c1

Elf2

Ahr

Foxo1

24

Atf3

Foxp3

Mxd1

Gata1

Gata3

25

Cebpe

Esr1

Mxd4

Pparg

Lef1

  1. TFs displayed in bold font were used as ground truth because they were targeted in the published study as critical regulators for each gene set.