From: Discovery of error-tolerant biclusters from noisy gene expression data
Run ID | Parameter settings | # total biclusters | #genes covered1 | #top biclusters | # genes covered2 | Size distribution2#of genes:#of biclusters | Time taken (seconds) |
---|---|---|---|---|---|---|---|
Error-tolerant biclusters on Mega Yeast data set | |||||||
ET-bicluster M 1 | α = 0.5, ε= 0 for RS ε [120 150), ε = 0.25 for RS ≥ 150 | 153,960 | 361 | 500 | 295 | 2:128, 3:235, 4:8, 5:76, 6:39, 7:7, 8:2, 9:1, 10:2, 11:1, 13:1 | 10,560 |
ET-bicluster M 2 | α = 0.3, ε = 0 for RS ∈ [60 90), ε = 0.25 for RS ≥ 90 | 271,101 | 792 | 500 | 233 | 3:203, 4:28, 5:177, 6:80, 7:5, 8:3, 9:3, 10:1 | 33,000 |
RAP biclusters on Mega Yeast data set | |||||||
RAP M1 | α = 0.5, RS ≥ 120 | 33,330 | 361 | 500 | 247 | 2:68, 3:379, 4:33, 5:16, 6:4 | 642 |
RAP M 2 | α = 0.3, RS ≥ 60 | 94,806 | 792 | 500 | 241 | 3:384, 4:68, 5:43, 6:5 | 7,580 |
Error-tolerant biclusters on Hughes et al's data set | |||||||
ET-bicluster H 1 | α = 0.8, ε = 0 for RS ∈ [10 15), ε = 0.25 for RS ≥ 15 | 150,372 | 506 | 496 | 437 | 2:210, 3:187, 4:12, 5:66, 6:14, 7:3, 8:1, 10:1, 11:1, 13:1 | 8,360 |
ET-bicluster H 2 | α = 0.5, ε = 0 for RS ∈ [6 10), ε = 0.25 for RS >10 | 234,761 | 1135 | 500 | 443 | 2:115, 3:258, 4:22, 5:69, 6:24, 7:6, 8:1, 9:2, 11:1, 13:1, 14:1 | 21,745 |
RAP biclusters on Hughes et al's data set | |||||||
RAP h 1 | α = 0.8, RS ≥ 10 | 56,009 | 506 | 495 | 438 | 2:212, 3:207, 4:25, 5:40, 6:5, 7:3, 8:2, 11:1 | 2,835 |
RAP h 2 | α = 0.5, RS ≥ 6 | 80,335 | 1135 | 500 | 405 | 2:96, 3:303, 4:18, 5:75, 6:2, 7:2, 8:3, 12:1 | 1,505 |