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Table 1 Most significant modules according to function or motif

From: Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana

ID Size Enriched Function p- value Enriched Motif p- value
c1402 174 structural constituent of ribosome <1E-300 UP1ATMSD <1E-16
c1473 110 photosynthetic membrane 1.30E-137 ACGTROOT1.1 4.00E-15
c1051 70 proteasome complex 5.90E-126 SITEIIATCYTC 6.00E-06
c1474 154 plastid 3.70E-93 UP1ATMSD 1.40E-08
c453 91 response to heat 1.20E-54 HSE 3.80E-11
c992 47 nucleosome assembly 1.20E-50 OCETYPEINTHISTONE 2.30E-14
c619 47 mitochondrion 5.40E-50 - -
c1434 53 plastid 5.10E-41 UP1ATMSD 5.60E-05
c1463 56 chloroplast thylakoid 5.60E-38 - -
c620 65 mitochondrion 1.00E-32 SITEIIATCYTC 1.60E-07
c1090 30 RNA splicing 1.70E-31 - -
c991 45 DNA metabolic process 2.20E-31 E2FAT 1.10E-06
c148 112 nutrient reservoir activity 6.60E-31 RYREPEATBNNAPA 4.50E-12
c1257 55 endoplasmic reticulum 7.30E-30 UPRMOTIFIIAT 3.70E-11
c973 134 microtubule motor activity 8.20E-30 MYBCOREATCYCB1 6.10E-11
c701 17 aromatic compound metabolic process 8.00E-24 L1DCPAL1 5.90E-08
c294 26 response to water 2.60E-22 DRECRTCOREAT 5.10E-06
c778 99 circadian rhythm 2.00E-17 EVENINGAT 2.20E-16
c711 18 response to auxin stimulus 6.70E-15 MYCATRD22 4.90E-05
c488 72 defense response 7.10E-15 CGCGBOXAT 2.30E-10
c1369 59 ribonucleoprotein complex biogenesis and assembly 8.00E-15 UP2ATMSD <1E-16
c489 81 response to abiotic stimulus 9.30E-09 CGCGBOXAT <1E-16
c493 25 glutathione transferase activity 7.00E-07 OCSELEMENTAT.4 7.80E-16
c316 9 abscisic acid mediated signaling 1.90E-06 ABREATRD22 1.00E-06
c140 36 embryonic development ending in seed dormancy 1.60E-05 ABRERATCAL 4.00E-10
c302 14 response to abscisic acid stimulus 1.90E-04 ABRE3HVA1 9.20E-07