Table 1 Most significant modules according to function or motif
From: Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana
ID | Size | Enriched Function | p- value | Enriched Motif | p- value |
|---|---|---|---|---|---|
c1402 | 174 | structural constituent of ribosome | <1E-300 | UP1ATMSD | <1E-16 |
c1473 | 110 | photosynthetic membrane | 1.30E-137 | ACGTROOT1.1 | 4.00E-15 |
c1051 | 70 | proteasome complex | 5.90E-126 | SITEIIATCYTC | 6.00E-06 |
c1474 | 154 | plastid | 3.70E-93 | UP1ATMSD | 1.40E-08 |
c453 | 91 | response to heat | 1.20E-54 | HSE | 3.80E-11 |
c992 | 47 | nucleosome assembly | 1.20E-50 | OCETYPEINTHISTONE | 2.30E-14 |
c619 | 47 | mitochondrion | 5.40E-50 | - | - |
c1434 | 53 | plastid | 5.10E-41 | UP1ATMSD | 5.60E-05 |
c1463 | 56 | chloroplast thylakoid | 5.60E-38 | - | - |
c620 | 65 | mitochondrion | 1.00E-32 | SITEIIATCYTC | 1.60E-07 |
c1090 | 30 | RNA splicing | 1.70E-31 | - | - |
c991 | 45 | DNA metabolic process | 2.20E-31 | E2FAT | 1.10E-06 |
c148 | 112 | nutrient reservoir activity | 6.60E-31 | RYREPEATBNNAPA | 4.50E-12 |
c1257 | 55 | endoplasmic reticulum | 7.30E-30 | UPRMOTIFIIAT | 3.70E-11 |
c973 | 134 | microtubule motor activity | 8.20E-30 | MYBCOREATCYCB1 | 6.10E-11 |
c701 | 17 | aromatic compound metabolic process | 8.00E-24 | L1DCPAL1 | 5.90E-08 |
c294 | 26 | response to water | 2.60E-22 | DRECRTCOREAT | 5.10E-06 |
c778 | 99 | circadian rhythm | 2.00E-17 | EVENINGAT | 2.20E-16 |
c711 | 18 | response to auxin stimulus | 6.70E-15 | MYCATRD22 | 4.90E-05 |
c488 | 72 | defense response | 7.10E-15 | CGCGBOXAT | 2.30E-10 |
c1369 | 59 | ribonucleoprotein complex biogenesis and assembly | 8.00E-15 | UP2ATMSD | <1E-16 |
c489 | 81 | response to abiotic stimulus | 9.30E-09 | CGCGBOXAT | <1E-16 |
c493 | 25 | glutathione transferase activity | 7.00E-07 | OCSELEMENTAT.4 | 7.80E-16 |
c316 | 9 | abscisic acid mediated signaling | 1.90E-06 | ABREATRD22 | 1.00E-06 |
c140 | 36 | embryonic development ending in seed dormancy | 1.60E-05 | ABRERATCAL | 4.00E-10 |
c302 | 14 | response to abscisic acid stimulus | 1.90E-04 | ABRE3HVA1 | 9.20E-07 |