TY - JOUR AU - Godzik, A. PY - 2003 DA - 2003// TI - Fold recognition methods JO - Methods Biochem. Anal VL - 44 ID - Godzik2003 ER - TY - JOUR AU - Orengo, C. A. AU - Michie, A. D. AU - Jones, S. AU - Jones, D. T. AU - Swindells, M. B. AU - Thornton, J. M. PY - 1997 DA - 1997// TI - CATH—a hierarchic classification of protein domain structures JO - Structure VL - 5 UR - https://doi.org/10.1016/S0969-2126(97)00260-8 DO - 10.1016/S0969-2126(97)00260-8 ID - Orengo1997 ER - TY - JOUR AU - Govindarajan, S. AU - Recabarren, R. AU - Goldstein, R. A. PY - 1999 DA - 1999// TI - Estimating the total number of protein folds JO - Proteins VL - 35 UR - https://doi.org/3.0.CO;2-A DO - 3.0.CO;2-A ID - Govindarajan1999 ER - TY - JOUR AU - Xu, J. AU - Li, M. AU - Kim, D. AU - Xu, Y. PY - 2003 DA - 2003// TI - RAPTOR: optimal protein threading by linear programming JO - J. Bioinform. Comput. Biol VL - 1 UR - https://doi.org/10.1142/S0219720003000186 DO - 10.1142/S0219720003000186 ID - Xu2003 ER - TY - JOUR AU - Moult, J. PY - 2005 DA - 2005// TI - A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction JO - Curr. Opin. Struct. Biol VL - 15 UR - https://doi.org/10.1016/j.sbi.2005.05.011 DO - 10.1016/j.sbi.2005.05.011 ID - Moult2005 ER - TY - JOUR AU - Zemla, A. AU - Venclovas, C. AU - Moult, J. AU - Fidelis, K. PY - 1999 DA - 1999// TI - Processing and analysis of CASP3 protein structure predictions JO - Proteins VL - 3 UR - https://doi.org/3.0.CO;2-W DO - 3.0.CO;2-W ID - Zemla1999 ER - TY - JOUR AU - Ye, X. AU - O’Neil, P. K. AU - Foster, A. N. AU - Gajda, M. J. AU - Kosinski, J. AU - Kurowski, M. A. AU - Bujnicki, J. M. AU - Friedman, A. M. AU - Bailey-Kellogg, C. PY - 2004 DA - 2004// TI - Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure JO - Protein Sci VL - 13 UR - https://doi.org/10.1110/ps.04846604 DO - 10.1110/ps.04846604 ID - Ye2004 ER - TY - JOUR AU - Ye, X. AU - Friedman, A. M. AU - Bailey-Kellogg, C. PY - 2008 DA - 2008// TI - Optimizing Bayes error for protein structure model selection by stability mutagenesis JO - Comput Syst Bioinformatics Conf VL - 7 UR - https://doi.org/10.1142/9781848162648_0009 DO - 10.1142/9781848162648_0009 ID - Ye2008 ER - TY - JOUR AU - Grantcharova, V. AU - Riddle, D. AU - Baker, D. PY - 2000 DA - 2000// TI - Long-Range order in the src SH3 folding transition state JO - PNAS VL - 97 UR - https://doi.org/10.1073/pnas.97.13.7084 DO - 10.1073/pnas.97.13.7084 ID - Grantcharova2000 ER - TY - JOUR AU - Young, M. M. AU - Tang, N. AU - Hempel, J. C. AU - Oshiro, C. M. AU - Taylor, E. W. AU - Kuntz, I. D. AU - Gibson, B. W. AU - Dollinger, G. PY - 2000 DA - 2000// TI - High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry JO - PNAS VL - 97 UR - https://doi.org/10.1073/pnas.090099097 DO - 10.1073/pnas.090099097 ID - Young2000 ER - TY - JOUR AU - Chen, T. AU - Jaffe, J. AU - Church, G. PY - 2001 DA - 2001// TI - Algorithms for identifying protein cross-links via tandem mass spectrometry JO - J. Comp. Biol VL - 8 UR - https://doi.org/10.1089/106652701753307494 DO - 10.1089/106652701753307494 ID - Chen2001 ER - TY - JOUR AU - Haniu, M. AU - Narhi, L. O. AU - Arakawa, T. AU - Elliott, S. AU - Rohde, M. F. PY - 1993 DA - 1993// TI - Recombinant human erythropoietin (rHuEPO): cross-linking with disuccinimidyl esters and identification of the interfacing domains in EPO JO - Protein Sci VL - 2 UR - https://doi.org/10.1002/pro.5560020908 DO - 10.1002/pro.5560020908 ID - Haniu1993 ER - TY - JOUR AU - Kruppa, G. H. AU - Schoeniger, J. AU - Young, M. M. PY - 2003 DA - 2003// TI - A top down approach to protein structural studies using chemical cross-linking and Fourier transform mass spectrometry JO - Rapid Commun. Mass Spectrom VL - 17 UR - https://doi.org/10.1002/rcm.885 DO - 10.1002/rcm.885 ID - Kruppa2003 ER - TY - JOUR AU - Careaga, C. AU - Falke, J. PY - 1992 DA - 1992// TI - Thermal motions of surface alpha-helices in the D-galactose chemosensory receptor. Detection by disulfide trapping JO - J. Mol. Biol VL - 226 UR - https://doi.org/10.1016/0022-2836(92)91063-U DO - 10.1016/0022-2836(92)91063-U ID - Careaga1992 ER - TY - JOUR AU - Hughes, R. AU - Rice, P. AU - Steitz, T. AU - Grindley, N. PY - 1993 DA - 1993// TI - Protein-protein interactions directing resolvase site-specific recombination: A structure-function analysis JO - EMBO J VL - 12 ID - Hughes1993 ER - TY - JOUR AU - Kwaw, I. AU - Sun, J. AU - Kaback, H. PY - 2000 DA - 2000// TI - Thiol cross-linking of cytoplasmic loops in lactose permease of Escherichia coli JO - Biochemistry VL - 39 UR - https://doi.org/10.1021/bi992509g DO - 10.1021/bi992509g ID - Kwaw2000 ER - TY - JOUR AU - Saftalov, L. AU - Smith, P. A. AU - Friedman, A. M. AU - Bailey-Kellogg, C. PY - 2006 DA - 2006// TI - Site-directed combinatorial construction of chimaeric genes: general method for optimizing assembly of gene fragments JO - Proteins VL - 64 UR - https://doi.org/10.1002/prot.20984 DO - 10.1002/prot.20984 ID - Saftalov2006 ER - TY - JOUR AU - Avramova, L. V. AU - Desai, J. AU - Weaver, S. AU - Friedman, A. M. AU - Bailey-Kellogg, C. PY - 2008 DA - 2008// TI - Robotic hierarchical mixing for the production of combinatorial libraries of proteins and small molecules JO - J. Comb. Chem VL - 10 UR - https://doi.org/10.1021/cc700106e DO - 10.1021/cc700106e ID - Avramova2008 ER - TY - CHAP AU - Liu, H. AU - Motoda, H. PY - 1998 DA - 1998// TI - Feature selection for knowledge discovery and data mining BT - Springer ID - Liu1998 ER - TY - JOUR AU - Guyon, I. AU - Elisseeff, A. PY - 2003 DA - 2003// TI - An introduction to variable and feature selection JO - Journal of Machine Learning Research VL - 3 ID - Guyon2003 ER - TY - JOUR AU - Peng, H. AU - Long, F. AU - Ding, C. PY - 2005 DA - 2005// TI - Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy JO - IEEE Trans Pattern Anal Mach Intell VL - 27 UR - https://doi.org/10.1109/TPAMI.2005.159 DO - 10.1109/TPAMI.2005.159 ID - Peng2005 ER - TY - JOUR AU - Kabsch, W. AU - Sander, C. PY - 1983 DA - 1983// TI - Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features JO - Biopolymers VL - 22 UR - https://doi.org/10.1002/bip.360221211 DO - 10.1002/bip.360221211 ID - Kabsch1983 ER - TY - JOUR AU - Jones, D. PY - 1999 DA - 1999// TI - Protein secondary structure prediction based on position-specific scoring matrices JO - J. Mol. Biol VL - 292 UR - https://doi.org/10.1006/jmbi.1999.3091 DO - 10.1006/jmbi.1999.3091 ID - Jones1999 ER - TY - JOUR AU - Suhre, K. AU - Sanejouand, Y. H. PY - 2004 DA - 2004// TI - ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh368 DO - 10.1093/nar/gkh368 ID - Suhre2004 ER -