Finding consistent disease subnetworks across microarray datasets

BMC Bioinformatics

Table 2 Number of overlap significant subnetworks between the datasets

Disease	Dataset 1	Dataset 2	SNet	GSEA
Leukaemia	Golub	Armstrong	20	0
ALL subtype	Ross	Yeoh	10	6
DMD	Haslett	Pescatori	7	10
Lung	Bhattacharjee	Garber	9	0

Table showing the number of significant overlapping subnetworks between the significant pathways. Each row refers to a separate disease (as indicated in the first column). Each disease is tested against two datasets depicted in the second and third column. The overlapping figures refer to the pathway overlaps obtained from running SNet (column 4) and GSEA (column 5).

ISSN: 1471-2105