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Table 4 Number and percentage of significant overlap genes with t-test

From: Finding consistent disease subnetworks across microarray datasets

  

SNet

t-test

t-test

Leukaemia

Num Genes

Genes overlap

δ =84

91.30%

1239

73.01%

84

14.29%

ALL subtype

Num Genes

Genes overlap

δ =75

93.01%

1072

60.20%

75

57.33%

DMD

Num Genes

Genes overlap

δ =45

69.23%

1319

49.60%

45

20.00%

Lung

Num Genes

Genes overlap

δ =65

51.18%

2091

65.61

65

26.16%

  1. Table showing the number and percentage of significant overlapping genes. γ refers to the number of genes compared against and is the number of unique genes within all the significant subnetworks of the disease datasets. The gene overlap refers to the percentage gene overlap between the two datasets of a disease for SNet (column 3) and t-test (column 4: for genes at P leg 0.05; and column 5: for top γ significant genes).