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Table 2 Discrimination success rate and performance using the kmer-based method at different Kmer sizes

From: PTIGS-IdIt, a system for species identification by DNA sequences of the psbA-trnH intergenic spacer region

Size of Kmer

Discrimination success rate

Performance (cpu time cost : mS)

2

0.761

95.3

3

0.775

390.4

4

0.795

1564.2

5

0.823

5060.4

6

0.813

19007.1

7

0.611

74949.3

  1. The test data is the same as those shown in Table 1.
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BMC Bioinformatics

ISSN: 1471-2105

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