Table 5 Comparison of prediction methods on the PRI727 and PRI267 datasets.
From: Prediction of RNA-binding amino acids from protein and RNA sequences
Approach | Sensitivity (%) | Specificity (%) | Accuracy (%) | NP (%) | Fm (%) | CC |
|---|---|---|---|---|---|---|
PRI727 dataset | ||||||
RNABindR (opt) | 51.5 | 90.4 | 88.0 | 70.9 | 65.6 | 0.31 |
RNABindR (sp) | 29.6 | 96.6 | 92.4 | 63.1 | 45.3 | 0.29 |
RNABindR (sn) | 90.2 | 45.9 | 48.6 | 68.0 | 60.8 | 0.18 |
BindN (sn80) | 88.4 | 51.0 | 53.4 | 69.7 | 64.7 | 0.19 |
BindN (sp80) | 67.2 | 77.2 | 76.5 | 72.2 | 71.8 | 0.25 |
Our method 1 | 87.2 | 81.7 | 82.1 | 84.5 | 84.4 | 0.40 |
Our method 2 | 82.1 | 76.4 | 76.8 | 79.2 | 79.1 | 0.32 |
PRI267 dataset | ||||||
RNABindR (opt) | 4.0 | 98.4 | 96.4 | 51.2 | 7.6 | 0.03 |
RNABindR (sp) | 0.8 | 99.8 | 97.8 | 50.3 | 1.7 | 0.02 |
RNABindR (sn) | 65.9 | 57.9 | 58.1 | 61.9 | 61.7 | 0.07 |
BindN (sn80) | 80.2 | 53.5 | 54.0 | 66.8 | 64.2 | 0.10 |
BindN (sp80) | 45.6 | 80.2 | 79.5 | 62.9 | 58.1 | 0.09 |
Our method 1 | 60.7 | 91.0 | 90.3 | 75.8 | 72.8 | 0.24 |
Our method 2 | 48.0 | 85.6 | 84.8 | 66.8 | 61.5 | 0.13 |