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Table 3 Comparison of inference algorithms

From: A protein-dependent side-chain rotamer library

Comparison

Attribute

LBP

GBP

MF

TRBP

Accuracy of χ1

80.07

80.03

79.54

76.45

Accuracy of χ1+2

60.78

60.72

60.33

55.58

Average rank of χ1

1.50

1.51

1.54

1.59

Average rank of χ1+2

2.23

2.25

2.33

2.45

Average execution time (in seconds)

29.99

63.19

14.17

189.94

  1. Comparison of the average accuracy for side-chain prediction, the average rank of the first correct rotamers, and the average running time for loopy belief propagation (LBP), generalized belief propagation (GBP), mean field approximation (MF), and tree re-weighted belief propagation (TRBP).
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BMC Bioinformatics

ISSN: 1471-2105

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