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Table 1 List of servers and algorithms

From: Integrative analysis workflow for the structural and functional classification of C-type lectins

SN

Server (URL)

Type of features

1

Pfam (http://pfam.sanger.ac.uk)

Domains

2

Prosite (http://expasy.org/prosite)

Domains, motifs

3

SMART (http://smart.embl-heidelberg.de)

Domains, motifs

4

TMHMM 2.0 (http://www.cbs.dtu.dk/services/TMHMM)

Transmembrane helix

5

NetNGlyc (http://www.cbs.dtu.dk/services/NetNGlyc)

N-linked Glycosylation

6

NetOGlyc (http://www.cbs.dtu.dk/services/NetOGlyc)

O-linked Glycosylation

7

Phospho.ELM (http://phospho.elm.eu.org)

Phosphorylation Sites

8

ELM (http://elm.eu.org)

Eukaryotic linear motifs

  1. The table shows a non-exhaustive list of web servers that can be queried to predict various sequence-based features.