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Table 1 Parameters used in simulation data

From: ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information

Total SVs 200
Reference genome Human chromosome 22 (Build 37 ref)
Distribution of SV length N(50, 5), N(80, 8), N(100, 10), N(120, 12),
N(150, 15), N(170, 17), N(200, 20), N(400, 40)
N(600, 60), N(800, 80), N (1000, 100)
N(2000, 200), N(4000, 400)
The rate of single nucleotide alterations 1/10000
The number of tandem repeat N(40, 20) (>1)
Mean depth of coverage 5, 10, 15, 20, 40
Read lengths 50, 75, 100, 108
Distribution of template lengths N(400, 50)
  1. We generated various data each of which has different distribution of SV length, mean depth of coverage or read lengths. Values with bold type are the default (for example, if mean depth of coverage is set to five, then the distribution of SV length and read lengths is set to N(1000, 100) and 108.)