Table 6 Classification rules
SNP location | Rule* | Classification |
|---|---|---|
Exon | ORF 1 or 0 | probable |
Exon | ORF 2 and Gene prediction 1 | likely |
Exon | ORF 2 and (Gene prediction 2 or 3 or 4) | unlikely |
Exon | ORF 3 or 4 | unlikely |
Exon | ORF 5 and (Gene prediction 1 or 2) and (SNP distance 1 or 2) | likely |
Exon | ORF 5 and ((Gene prediction 3 or 4) or (SNP distance 3 or 4)) | unlikely |
Intron | SNP distance 1 and (Gene prediction 1 or 2) | probable |
Intron | SNP distance 1 and (Gene prediction 3 or 4) | unlikely |
Intron | SNP distance 2 and (Gene prediction 1 or 2) | likely |
Intron | SNP distance 2 and (Gene prediction 3 or 4) | unlikely |
Intron | SNP distance 3 and (Gene prediction 1 or 2) | likely |
Intron | SNP distance 3 and (Gene prediction 3 or 4) | unlikely |