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Table 6 Classification rules

From: Genome-wide prediction of splice-modifying SNPs in human genes using a new analysis pipeline called AASsites

SNP location Rule* Classification
Exon ORF 1 or 0 probable
Exon ORF 2 and Gene prediction 1 likely
Exon ORF 2 and (Gene prediction 2 or 3 or 4) unlikely
Exon ORF 3 or 4 unlikely
Exon ORF 5 and (Gene prediction 1 or 2) and (SNP distance 1 or 2) likely
Exon ORF 5 and ((Gene prediction 3 or 4) or (SNP distance 3 or 4)) unlikely
Intron SNP distance 1 and (Gene prediction 1 or 2) probable
Intron SNP distance 1 and (Gene prediction 3 or 4) unlikely
Intron SNP distance 2 and (Gene prediction 1 or 2) likely
Intron SNP distance 2 and (Gene prediction 3 or 4) unlikely
Intron SNP distance 3 and (Gene prediction 1 or 2) likely
Intron SNP distance 3 and (Gene prediction 3 or 4) unlikely
  1. * Rule means the combination of scores for the different features from table 5
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BMC Bioinformatics

ISSN: 1471-2105

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