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Table 3 Significance of selected SNP networks in different thresholds of T1D study.

From: SNP and gene networks construction and analysis from classification of copy number variations data

PLINK thresholds NO. of networks Selected mean Random Significance value
    mean variance  
0.1 2 1(0.0985) 1(0.5648) 1(0.0991) 1.2672 × 10–6
   2(0.0450) 2(0.5645) 2(0.1008) 1.2765 × 10–7
0.05 4 1(0.0298) 1(0.5805) 1(0.1018) 3.1578 × 10–8
   2(0.0225) 2(0.5682) 2(0.0995) 2.0741 × 10–8
   3(0.0306) 3(0.5638) 3(0.1005) 5.6191 × 10–8
   4(0.0203) 4(0.5633) 4(0.1002) 2.9939 × 10–8
0.01 5 1(0.0054) 1(0.5862) 1(0.1003) 3.5062 × 10–9
   2(0.0057) 2(0.5645) 2(0.0983) 6.5545 × 10–9
   3(0.0012) 3(0.5622) 3(0.0971) 3.7898 × 10–9
   4(0.0011) 4(0.5545) 4(0.1009) 2.0716 × 10–8
   5(0.0015) 5(0.5528) 5(0.1004) 1.9979 × 10–8
0.005 3 1(0.0011) 1(0.5327) 1(0.1024) 1.0436 × 10–7
   2(0.0012) 2(0.5300) 2(0.0998) 5.8348 × 10–8
   3(0.0015) 3(0.5762) 3(0.1004) 5.1991 × 10–9
0.001 1 1(0.0001) 1(0.5578) 1(0.0950) 2.1721 × 10–9