A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

Table 7 Performance of top 10 reported runs to ACT in BC3.

Team	Run	Acc.	Rank	F ₁	Rank	MCC	Rank	AUCiP/R	Rank	RP4
T81	*VTT5-SP*	0.864	21	0.6483	1	0.58974	1	0.7339	1	21
T73	RUN_2	0.8915	1	0.6132	5	0.55306	4	0.6796	5	100
T73	RUN_4	0.8888	3	0.6142	4	0.55054	5	0.6798	4	240
T81	*VTT5-Bi*	0.859	25	0.6366	2	0.57523	2	0.7127	3	300
T81	*VTT3-SP*	0.844	30	0.6280	3	0.57345	3	0.7143	2	540
T73	RUN-1	0.8755	16	0.6083	6	0.53524	6	0.6591	6	3456
T73	RUN_3	0.8778	13	0.6014	9	0.52932	8	0.6589	7	6552
T73	RUN_5	0.8762	15	0.6033	8	0.53031	7	0.6537	8	6720
T90	RUN_3	0.8832	9	0.5964	11	0.52914	9	0.6524	9	8019
T65	RUN_2	0.8793	12	0.5982	10	0.52727	10	0.6389	10	12000

Shown are the values obtained on the official BC3 gold standard by the F-Score, Accuracy, Matthew’s Correlation Coefficient, and Area Under the interpolated Precision and Recall Curve (computed with the official script, adding F-Score), as well as their ranks. RP4 denotes the rank product of these 4 measures. Boldfaced values represent best and second-best performance for respective measure.

ISSN: 1471-2105