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Table 6 Public software and resources used in the GN task.

From: The gene normalization task in BioCreative III

Step Software Other Public Resources
1) ABNER [26]
AIIAGMT [27]
BANNER [28]
GNAT [29]
NERsuite [30]
LingPipe [31]
Entrez Gene [32]
Gene and Protein Synonym DataBase (GPSDB) [33]
Unified Medical Language System (UMLS) [34]
UniProt [35]
2) Linnaeus [25] NCBI Taxonomy
Cell Line Knowledge Base (CLKB) [36, 37]
3) & 4) Entrez Gene [32]
Lucene [38]
BioThesaurus [39]
GeneRIF annotations
Gene Ontology (GO) annotations & predictions [40]
MeSH annotations
OMIM records