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Table 4 ACT participant results

From: The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

Team Run/Srvr Accuracy Specificity Sensitivity F-Score MCC AUC iP/R Time_half
TC RUN _1 89.03 93.87 61.98 63.16 0.56733 68.98 30.13
T65 RUN_1 88.68 97.64 38.57 50.83 0.48297 63.85 40.19
T65 RUN_2 87.93 93.07 59.23 59.82 0.52727 63.89 40.19
T65 RUN_3 67.05 64.19 83.08 43.34 0.34244 41.74 55.95
T65 RUN_4 73.68 74.13 71.21 45.08 0.34650 41.74 55.95
T65 RUN_5 88.00 94.40 52.20 56.89 0.50255 62.39 40.83
T70 RUN_1 56.45 49.70 94.18 39.62 0.31789 56.76 42.12
T70 RUN_2 87.41 96.11 38.79 48.32 0.43346 56.76 42.13
T70 RUN_3 81.92 83.61 72.53 54.91 0.46563 56.76 42.12
T70 RUN_4 47.77 39.04 96.59 35.95 0.27060 56.76 42.12
T70 RUN_5 86.84 98.62 20.99 32.62 0.34488 56.76 42.13
T73 RUN_1 87.55 91.81 63.74 60.83 0.53524 65.91 38.33
T73 RUN_2 89.15 94.95 56.70 61.32 0.55306 67.96 37.10
T73 RUN_3 87.78 92.61 60.77 60.14 0.52932 65.89 38.19
T73 RUN_4 88.88 94.34 58.35 61.42 0.55054 67.98 37.15
T73 RUN_5 87.62 92.18 62.09 60.33 0.53031 65.37 38.40
T81 RUN_1 59.03 58.76 60.55 30.96 0.13949 19.93 82.27
T81 RUN_2 58.47 57.86 61.87 31.12 0.14219 19.69 82.76
T81 RUN_3 25.37 14.72 84.95 25.66 -0.00344 15.66 102.73
T81 RUN_4 63.45 69.16 31.54 20.74 0.00538 16.20 104.95
T81 RUN_5 69.17 77.35 23.41 18.72 0.00645 15.63 98.72
T81 SRVR_9 84.88 99.98 0.44 0.88 0.05220 44.19 50.11
T81 SRVR_10 85.38 99.61 5.82 10.78 0.17771 50.25 45.11
T81 SRVR_11 84.73 99.86 0.11 0.22 -0.00272 46.02 48.23
T81 SRVR_12 84.30 98.86 2.86 5.23 0.05244 32.11 56.89
T81 SRVR_13 84.88 99.92 0.77 1.52 0.05791 18.59 113.11
T88 RUN_1 42.63 35.11 84.73 30.94 0.15238 21.97 84.90
T88 RUN_2 56.92 53.73 74.73 34.47 0.20417 26.04 75.33
T89 RUN_1 80.02 80.90 75.06 53.26 0.44911 61.29 41.31
T89 RUN_2 81.00 81.75 76.81 55.08 0.47242 62.13 40.99
T89 RUN_3 82.40 83.85 74.29 56.15 0.48180 60.48 41.72
T89 RUN_4 87.73 94.79 48.24 54.40 0.47967 43.76 43.09
T89 RUN_5 87.27 91.81 61.87 59.58 0.52082 48.47 44.57
T89 SRVR_4 77.80 77.84 77.58 51.46 0.43152 57.44 44.63
T89 SRVR_5 78.05 78.15 77.47 51.71 0.43424 57.56 45.20
T89 SRVR_6 79.90 81.00 73.74 52.67 0.44073 54.97 45.93
T89 SRVR_7 86.25 92.06 53.74 54.24 0.46156 41.58 45.94
T89 SRVR_8 86.87 90.39 67.14 60.80 0.53336 47.40 45.55
T90 RUN_1 88.73 95.15 52.86 58.73 0.52736 51.14 39.02
T90 RUN_2 88.70 94.97 53.63 59.01 0.52890 51.65 39.14
T90 RUN_3 88.32 93.93 56.92 59.64 0.52914 65.24 39.29
T90 RUN_4 88.93 96.03 49.23 57.44 0.52237 49.26 70.68
T90 RUN_5 88.60 95.05 52.53 58.29 0.52204 50.83 39.27
T92 RUN_1 86.22 90.77 60.77 57.22 0.49155 50.99 42.40
T100 RUN_1 88.77 96.82 43.74 54.15 0.50005 61.62 42.57
T100 RUN_2 88.27 93.89 56.81 59.49 0.52732 61.86 39.05
T100 RUN_3 81.13 82.69 72.42 53.80 0.45256 60.25 41.60
T100 RUN_4 81.85 82.85 76.26 56.04 0.48270 63.75 38.41
T104 RUN_1 80.12 80.69 76.92 53.99 0.45999 53.67 48.21
T104 RUN_2 80.07 80.47 77.80 54.21 0.46370 53.67 48.21
T104 RUN_3 64.93 59.86 93.3049 44.66 0.38161 53.67 48.21
T104 RUN_4 69.78 66.25 89.56 47.34 0.40530 53.67 48.21
T104 RUN_5 86.27 98.47 18.02 28.47 0.30064 53.67 142.95
  1. Evaluation results based on the unrefined Gold Standard, in terms of Accuracy, MCC Score and AUC iP/R. The highest score for each evaluation column is show in bold typeface. Run/Srvr (RUN = offline run/SRVR = online run via the BCMS), MCC (Matthew's Correlation Coefficient), AUC iP/R (Area under the interpolated Precion/Recall curve). Time_half is the fraction of time needed to classify half of the positive abstracts using the output of that run when compared to unranked results. Note that some runs submitted by mistake the opposite ranking as requested for the negative records, which explains higher classification time (e.g. Team 104, RUN 5 with Time_half of 142.95), inverting in these cases the order of negative articles resulted in comparable time savings to the other systems.