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Table 6 IMT micro-averaged participant results

From: The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

Team

Run/Srvr

Precision

Recall

F-Score

MCC

AUC iP/R

Base _Top4

RUN _1

28.60

48.20

35.90

-

0.15924

Base _ Regex

RUN _1

32.45

22.34

26.46

-

-

T65

RUN_1

8.77

84.82

15.89

0.23552

0.27588

T65

RUN_2

2.45

100.00

4.78

0.06259

0.24484

T65

RUN_3

9.42

81.78

16.89

0.24172

0.27727

T65

RUN_4

33.48

42.32

37.39

0.36166

0.14169

T65

RUN_5

2.44

100.00

4.76

0.06193

0.29016

T69

RUN_1

52.07

55.03

53.51

0.52519

0.34302

T69

RUN_2

54.34

53.51

53.92

0.52958

0.33824

T69

RUN_3

57.36

50.29

53.59

0.52796

0.32539

T69

RUN_4

59.25

48.01

53.04

0.52456

0.31711

T69

RUN_5

61.33

43.64

51.00

0.50896

0.29373

T70

RUN_1

48.61

23.15

31.36

0.32617

0.12949

T70

RUN_2

70.00

11.95

20.42

0.28419

0.08731

T70

RUN_3

80.65

4.74

8.96

0.19270

0.03826

T70

RUN_4

31.22

36.43

33.63

0.32216

0.15688

T70

RUN_5

32.69

15.94

21.43

0.21717

0.05734

T81

RUN_1

4.54

66.03

8.50

0.11406

0.07716

T81

RUN_2

8.71

42.13

14.43

0.15560

0.06239

T81

RUN_3

13.51

28.46

18.33

0.17168

0.04657

T81

RUN_4

13.20

27.70

17.88

0.16667

0.05601

T81

RUN_5

21.35

22.20

21.77

0.20090

0.05283

T88

RUN_1

28.44

45.16

34.90

0.34146

0.20244

T88

RUN_2

28.17

45.92

34.92

0.34263

0.20069

T89

RUN_1

52.52

49.53

50.98

0.49997

0.28202

T89

RUN_2

52.02

48.96

50.44

0.49451

0.28589

T89

RUN_3

50.78

49.34

50.05

0.49016

0.27238

T89

RUN_4

52.50

49.91

51.17

0.50181

0.29220

T89

RUN_5

52.58

52.18

52.38

0.51382

0.29980

T89

SRVR_4

52.71

51.61

52.16

0.51163

0.29926

T89

SRVR_5

52.28

50.10

51.16

0.50168

0.30046

T89

SRVR_6

52.28

52.18

52.23

0.51226

0.30049

T89

SRVR_7

49.55

52.56

51.01

0.49972

0.29303

T89

SRVR_8

51.76

50.29

51.01

0.49999

0.29766

T90

RUN_1

53.33

47.06

50.00

0.49113

0.26805

T90

RUN_2

52.56

48.77

50.59

0.49625

0.28386

T90

RUN_3

52.30

58.25

0.5512

0.54201

0.35423

T90

RUN_4

61.09

38.14

46.96

0.47436

0.25209

T90

RUN_5

64.24

35.10

45.40

0.46707

0.24270

T100

RUN_1

44.59

51.61

47.85

0.46794

0.26055

T100

RUN_2

39.86

54.84

46.17

0.45448

0.26982

T100

RUN_3

35.29

44.59

39.40

0.38240

0.15734

T100

RUN_4

35.34

44.59

39.43

0.38271

0.15758

T100

RUN_5

54.86

18.22

27.35

0.30847

0.11109

  1. Micro-averaged results when evaluating all documents (i.e., measuring the overall performance of each run on the whole document set). The highest score for each evaluation column is show in bold typeface, the lowest in italics. Run/Srvr: RUN = offline run, SRVR = online server run via BCMS; MCC: Matthew's Correlation Coefficient; AUC iP/R: Area under the interpolated precision/recall curve (micro- averaged by iterating over the precision/recall values of the highest ranked annotation of all articles, then all second ranked annotations, etc.). Base_Top4: baseline system that assigns the four most frequent classes ordered by their frequencies in the training/development set. Base_Regex: simple matching strategy based on regular expressions.
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BMC Bioinformatics

ISSN: 1471-2105

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